Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| efp | rplM | SBG_3785 | SBG_2973 | Elongation factor P. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.974 |
| efp | rplR | SBG_3785 | SBG_3033 | Elongation factor P. | 50S ribosomal subunit protein L18. | 0.977 |
| efp | rpsD | SBG_3785 | SBG_3026 | Elongation factor P. | 30S ribosomal subunit protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.973 |
| efp | rpsJ | SBG_3785 | SBG_3050 | Elongation factor P. | 30S ribosomal subunit protein S10. | 0.969 |
| efp | rpsM | SBG_3785 | SBG_3028 | Elongation factor P. | 30S ribosomal subunit protein S13. | 0.972 |
| efp | rpsO | SBG_3785 | SBG_2913 | Elongation factor P. | 30S ribosomal subunit protein S15; Belongs to the universal ribosomal protein uS15 family. | 0.970 |
| efp | rpsQ | SBG_3785 | SBG_3040 | Elongation factor P. | 30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.971 |
| efp | rpsS | SBG_3785 | SBG_3045 | Elongation factor P. | 30S ribosomal subunit protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.968 |
| efp | yjeA | SBG_3785 | SBG_3793 | Elongation factor P. | lysyl-tRNA synthetase; With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF- P) on 'Lys-34'. Catalyzes the ATP-dependent activation of (R)-beta- lysine produced by EpmB, forming a lysyl-adenylate, from which the beta-lysyl moiety is then transferred to the epsilon-amino group of EF- P 'Lys-34'; Belongs to the class-II aminoacyl-tRNA synthetase family. EpmA subfamily. | 0.975 |
| efp | yjeK | SBG_3785 | SBG_3784 | Elongation factor P. | Conserved hypothetical protein. | 0.980 |
| rplM | efp | SBG_2973 | SBG_3785 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Elongation factor P. | 0.974 |
| rplM | rplR | SBG_2973 | SBG_3033 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal subunit protein L18. | 0.999 |
| rplM | rpsD | SBG_2973 | SBG_3026 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal subunit protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.996 |
| rplM | rpsJ | SBG_2973 | SBG_3050 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal subunit protein S10. | 0.993 |
| rplM | rpsM | SBG_2973 | SBG_3028 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal subunit protein S13. | 0.998 |
| rplM | rpsO | SBG_2973 | SBG_2913 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal subunit protein S15; Belongs to the universal ribosomal protein uS15 family. | 0.994 |
| rplM | rpsQ | SBG_2973 | SBG_3040 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.995 |
| rplM | rpsS | SBG_2973 | SBG_3045 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal subunit protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.996 |
| rplR | efp | SBG_3033 | SBG_3785 | 50S ribosomal subunit protein L18. | Elongation factor P. | 0.977 |
| rplR | rplM | SBG_3033 | SBG_2973 | 50S ribosomal subunit protein L18. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
page 1 of 4