STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgaAPutative sugar phosphotransferase. (155 aa)    
Predicted Functional Partners:
sgaT
Putative transport protein SgaT.
 
 
 0.997
sgaB
Putative PTS system IIB protein.
 
 
 0.997
yjfR
Conserved hypothetical protein.
 
  
 0.994
sgaU
Conserved hypothetical protein.
 
  
 0.983
sgaH
Putative hexulose-6-phosphate synthase.
 
  
 0.979
ulaA_3
Putative PTS transport protein, component II.
 
 
 0.959
ulaB_1
PTS-family membrane transport protein, component IIB.
 
 
  0.957
SBG_2129
Putative sugar phosphotransferase component II B.
 
 
  0.957
sgaE
Putative class II aldolase.
  
  
 0.956
ulaA_2
Putative membrane permease.
 
 
 0.955
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.