Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sgaHPutative hexulose-6-phosphate synthase. (216 aa)    
Predicted Functional Partners:
sgaU
Conserved hypothetical protein.
 
 
 0.997
yjfR
Conserved hypothetical protein.
 
  
 0.987
sgaB
Putative PTS system IIB protein.
 
  
 0.969
sgaA
Putative sugar phosphotransferase.
 
  
 0.967
sgaT
Putative transport protein SgaT.
 
   
 0.964
sgaE
Putative class II aldolase.
 
  
 0.958
ulaA_3
Putative PTS transport protein, component II.
 
   
 0.745
yrbH
Conserved hypothetical protein.
  
  
 0.727
gutQ
Putative phosphosugar binding protein.
  
  
 0.723
yjfQ
Putative transcriptional regulator.
 
   
 0.620
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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