STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yagUPutative membrane protein. (184 aa)    
Predicted Functional Partners:
sgaB
Putative PTS system IIB protein.
 
     0.570
sgaU
Conserved hypothetical protein.
       0.535
sgaE
Putative class II aldolase.
       0.535
sgaH
Putative hexulose-6-phosphate synthase.
       0.528
proA
Gamma-glutamyl phosphate reductase.
      
 0.515
sgaA
Putative sugar phosphotransferase.
       0.511
sgaT
Putative transport protein SgaT.
       0.492
SBG_0934
Phage side tail fiber protein (pseudogene); 1 probable transmembrane helix predicted for SBG0933 by TMHMM2.0 at aa 43-65.
  
     0.471
uspF
Conserved hypothetical protein.
   
  
 0.460
yjgH
Conserved hypothetical protein.
      
 0.451
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.