Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SBG_3884 | arcA_2 | SBG_3884 | SBG_3887 | Putative membrane protein. | Arginine deiminase. | 0.900 |
SBG_3884 | argF | SBG_3884 | SBG_3885 | Putative membrane protein. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.837 |
SBG_3884 | argI | SBG_3884 | SBG_3889 | Putative membrane protein. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.566 |
SBG_3884 | argR_2 | SBG_3884 | SBG_3883 | Putative membrane protein. | Putative transcriptional regulator; Regulates arginine biosynthesis genes. | 0.548 |
arcA_2 | SBG_3884 | SBG_3887 | SBG_3884 | Arginine deiminase. | Putative membrane protein. | 0.900 |
arcA_2 | argF | SBG_3887 | SBG_3885 | Arginine deiminase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.996 |
arcA_2 | argG | SBG_3887 | SBG_2919 | Arginine deiminase. | Argininosuccinate synthetase. | 0.914 |
arcA_2 | argH | SBG_3887 | SBG_3614 | Arginine deiminase. | Argininosuccinate lyase. | 0.921 |
arcA_2 | argI | SBG_3887 | SBG_3889 | Arginine deiminase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.990 |
arcA_2 | argR_2 | SBG_3887 | SBG_3883 | Arginine deiminase. | Putative transcriptional regulator; Regulates arginine biosynthesis genes. | 0.556 |
argA | argB | SBG_2598 | SBG_3613 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Acetylglutamate kinase. | 0.989 |
argA | argC | SBG_2598 | SBG_3612 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.963 |
argA | argF | SBG_2598 | SBG_3885 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.833 |
argA | argG | SBG_2598 | SBG_2919 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Argininosuccinate synthetase. | 0.957 |
argA | argH | SBG_2598 | SBG_3614 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Argininosuccinate lyase. | 0.929 |
argA | argI | SBG_2598 | SBG_3889 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.852 |
argA | argR_2 | SBG_2598 | SBG_3883 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Putative transcriptional regulator; Regulates arginine biosynthesis genes. | 0.749 |
argA | artJ | SBG_2598 | SBG_0783 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | Arginine-binding periplasmic protein 2 precursor; Belongs to the bacterial solute-binding protein 3 family. | 0.675 |
argB | argA | SBG_3613 | SBG_2598 | Acetylglutamate kinase. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.989 |
argB | argC | SBG_3613 | SBG_3612 | Acetylglutamate kinase. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.999 |
page 1 of 5