STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaS_2Putative AraC-family transcriptional regulatory protein. (271 aa)    
Predicted Functional Partners:
rhtC_2
Putative lysE type translocator.
 
     0.800
yjiA
Conserved hypothetical protein.
 
     0.703
SBG_3942
Conserved hypothetical protein.
       0.650
marA
Multiple antibiotic resistance protein MarA.
  
     0.634
ramA
Transcriptional activator RamA.
  
     0.633
soxS
Regulatory protein SoxS.
  
     0.583
rob_1
Putative transcriptional regulator.
  
     0.512
ypdC_2
Putative AraC-family regulatory protein.
  
     0.510
yijO
Putative AraC-family transcriptional regulator.
  
     0.502
appY_2
araC family regulatory protein.
  
     0.498
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.