STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimIRibosomal-protein-alanine acetyltransferase. (148 aa)    
Predicted Functional Partners:
rimJ
Ribosomal-protein-alanine acetyltransferase.
  
 
 0.905
rimL
Ribosomal-protein-serine acetyltransferase.
  
 
 0.905
yiaC
Putative acetyltransferase.
  
   
 0.898
holD
DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
  
 0.897
yjaB
Putative acetyltransferase.
  
   
 0.894
phnO
Carbon-phosphorus lyase complex accessory protein (pseudogene); Involved in alkylphosphonate uptake, carries multiple frameshift mutations.
     
 0.885
SBG_2100
Conserved hypothetical protein.
   
  
 0.833
yjjG
Conserved hypothetical protein.
  
    0.812
yeaZ
Conserved hypothetical protein.
 
 
 0.766
SBG_2904
Putative acetyltransferase.
  
  
 0.665
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.