Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sthAPutative fimbrial protein. (181 aa)    
Predicted Functional Partners:
sthB
Putative fimbrial chaperone protein.
 
   0.880
sthC
Outer membrane usher protein.
 
   0.879
bcfG
Fimbrial chaperone.
  
 
 0.813
lpfA
Long polar fimbria protein A.
  
     0.772
lpfE
Fimbrial protein.
  
     0.771
SBG_3705
Large repetitive protein; The product of this CDS is composed of multiple degenerate repeats; note similarity to SBG3755 29.701% identity in 3313 aa overlap.
  
     0.771
SBG_1358
Putative ATP/GTP-binding protein.
  
     0.770
bigA
Putative surface-exposed virulence protein.
  
     0.769
aroQ
Putative chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate.
  
     0.768
SBG_1511
Invasin-like protein.
  
     0.764
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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