Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SUB0041GntR family regulatory protein. (238 aa)    
Predicted Functional Partners:
SUB0044
Sugar phosphotransferase system (PTS), sorbose-specific family, IIC component.
 
    0.790
SUB0042
Putative beta-galactosidase precursor; Belongs to the glycosyl hydrolase 35 family.
     
 0.774
SUB0043
Sugar phosphotransferase system (PTS), sorbose subfamily, IIB component.
 
    0.754
SUB0045
Sugar phosphotransferase system (PTS), mannose/fructose/sorbose family, IID component.
 
  
 0.753
SUB0046
Sugar phosphotransferase system (PTS), fructose family, IIA component.
 
     0.745
SUB1764
GntR family regulatory protein.
  
     0.678
SUB0740
Putative glycerophosphodiester phosphodiesterase.
      
 0.623
SUB0236
Putative glucose-specific phosphotransferase system (PTS), IIABC component.
  
  
 0.456
SUB0830
Transcription antiterminator (pseudogene); HMMPfam hit to PF00874, PRD domain, score 2.1e-14.
  
  
 0.456
scrA
Putative sucrose-specific phosphotransferase system (PTS), IIABC component.
  
  
 0.456
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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