STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0102UbiA prenyltransferase family protein. (299 aa)    
Predicted Functional Partners:
cydD
ABC transporter ATP-binding membrane protein.
 
   
 0.938
cydC
ABC transporter ATP-binding membrane protein; Transport ATP-binding protein CydC.
 
   
 0.934
SUB0103
Pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.933
cydB
Cytochrome d ubiquinol oxidase subunit II.
 
   
 0.919
cydA
Cytochrome d ubiquinol oxidase subunit I.
 
   
 0.899
SUB0108
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
   
 0.827
mvaA
3-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.
   
 
 0.685
fni
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
     
 0.502
SUB0868
ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
   
 0.446
SUB0101
Zinc-binding dehydrogenase; Similar to SUB1076, 55.714% identity (56.686% ungapped) in 350 aa overlap (1-348:1-346).
       0.439
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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