STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydCABC transporter ATP-binding membrane protein; Transport ATP-binding protein CydC. (572 aa)    
Predicted Functional Partners:
cydD
ABC transporter ATP-binding membrane protein.
 
 
0.997
cydB
Cytochrome d ubiquinol oxidase subunit II.
 
  
 0.991
cydA
Cytochrome d ubiquinol oxidase subunit I.
 
  
 0.989
SUB0102
UbiA prenyltransferase family protein.
 
   
 0.934
SUB0103
Pyridine nucleotide-disulphide oxidoreductase.
 
   
 0.892
SUB0919
ABC transporter ATP-binding protein.
 
     
0.820
SUB0108
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
     0.742
glnQ3
Putative glutamine transporter, ATP-binding protein 3; Similar to SUB1153, 61.066% identity (61.066% ungapped) in 244 aa overlap (1-244:1-244); and SUB0336, 59.592% identity (59.836% ungapped) in 245 aa overlap (1-244:1-245); and SUB0551, 53.719% identity (54.167% ungapped) in 242 aa overlap (5-244:3-244); and SUB1414, 50.207% identity (50.840% ungapped) in 241 aa overlap (5-242:1-241).
 
     
0.555
potA
Putative spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
     
0.449
metN
Putative D-methionine transport ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
     
0.401
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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