STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cydDABC transporter ATP-binding membrane protein. (581 aa)    
Predicted Functional Partners:
cydC
ABC transporter ATP-binding membrane protein; Transport ATP-binding protein CydC.
 
0.999
cydB
Cytochrome d ubiquinol oxidase subunit II.
 
  
 0.991
cydA
Cytochrome d ubiquinol oxidase subunit I.
 
  
 0.986
SUB0102
UbiA prenyltransferase family protein.
 
   
 0.948
SUB0103
Pyridine nucleotide-disulphide oxidoreductase.
 
   
 0.935
SUB0108
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
     0.759
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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