Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB0117Conserved hypothetical protein. (143 aa)    
Predicted Functional Partners:
SUB0119
Putative competence protein.
 
   
 0.907
SUB0125
Conserved hypothetical protein.
 
     0.812
comYC
Putative competence protein.
 
     0.807
SUB0118
Putative competence protein.
     
 0.792
rpoC
DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
     
 0.751
SUB0121
Putative competence protein.
       0.731
SUB0122
Putative exported protein.
       0.731
SUB0123
Putative membrane protein.
       0.731
SUB0010
Putative septum formation initiator protein.
  
     0.728
SUB0124
Putative exported protein.
       0.726
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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