Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB0118Putative competence protein. (313 aa)    
Predicted Functional Partners:
SUB0119
Putative competence protein.
 
 
 0.999
comYC
Putative competence protein.
  
  
 0.989
SUB0122
Putative exported protein.
  
 
 0.976
SUB0123
Putative membrane protein.
  
  
 0.962
comFA
Putative late competence protein.
   
  
 0.929
comEA
Putative competence protein.
 
  
 0.895
SUB1300
Type IV leader peptidase family protein.
 
 
 0.886
SUB0124
Putative exported protein.
     
 0.883
comEC
Putative competence protein.
 
  
 0.859
SUB0121
Putative competence protein.
     
 0.855
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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