Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB0128Putative membrane protein. (150 aa)    
Predicted Functional Partners:
SUB0127
Putative DNA-binding protein.
       0.835
SUB0129
CAAX amino terminal protease family membrane protein.
       0.813
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
       0.697
SUB0125
Conserved hypothetical protein.
       0.534
SUB0123
Putative membrane protein.
       0.477
SUB0124
Putative exported protein.
       0.476
SUB0119
Putative competence protein.
       0.447
comYC
Putative competence protein.
       0.431
SUB0122
Putative exported protein.
       0.430
SUB0118
Putative competence protein.
       0.428
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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