Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB0140ABC transporter ATP-binding protein. (267 aa)    
Predicted Functional Partners:
SUB0139
Transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.974
SUB0138
Putative lipoprotein; Similar to SUB0137, 52.412% identity (53.094% ungapped) in 311 aa overlap (6-316:7-313).
 
    0.952
SUB0137
Putative lipoprotein; Similar to SUB0138, 52.412% identity (53.094% ungapped) in 311 aa overlap (7-313:6-316).
 
    0.948
SUB1109
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.867
SUB1110
Putative exported protein.
 
    0.811
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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