STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0155Basic membrane protein; Similar to Listeria monocytogenes CD4+ T cell-stimulating antigen precursor TcsA UniProt:TCSA_LISMO (EMBL:AL591979) (357 aa) fasta scores: E()=1.4e-53, 48.179% id in 357 aa. Similar to SUB0950, 68.091% identity (68.876% ungapped) in 351 aa overlap (1-347:1-351). (347 aa)    
Predicted Functional Partners:
SUB0949
ABC transporter ATP-binding protein.
 
 
 0.978
SUB0947
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.971
SUB0948
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.969
SUB0950
Putative lipoprotein; Similar to SUB0155, 68.091% identity (68.876% ungapped) in 351 aa overlap (1-351:1-347).
  
  
 
0.901
pyrD
Putative dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.
     
 0.455
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
     
 0.447
SUB0118
Putative competence protein.
      
 0.443
SUB0137
Putative lipoprotein; Similar to SUB0138, 52.412% identity (53.094% ungapped) in 311 aa overlap (7-313:6-316).
      
 0.443
SUB0176
Putative exported protein.
      
 0.443
SUB0177
RNA polymerase sigma factor protein; Possible alternative translational start site; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.443
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.