Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SUB0158Putative sugar-binding regulatory protein. (322 aa)    
Predicted Functional Partners:
SUB0157
DeoR family regulatory protein.
 
   
 0.854
SUB0543
Dihydroxyacetone kinase family protein.
     0.812
SUB0156
Putative pyruvate formate-lyase activating enzyme.
 
     0.623
SUB0541
Dihydroxyacetone kinase family protein.
     0.502
srlB
Putative glucitol/sorbitol-specific phosphotransferase system (PTS), IIA component.
 
     0.458
pflD
Putative formate acetyltransferase.
 
     0.428
srlE
Putative glucitol/sorbitol-specific phosphotransferase system (PTS), IIBC component.
 
     0.418
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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