STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0170RpiR family regulatory protein. (265 aa)    
Predicted Functional Partners:
SUB0172
Oxidoreductase family protein.
 
     0.575
SUB0169
Putative membrane protein.
       0.574
SUB0806
Putative integrase (pseudogene); HMMPfam hit to PF00589, Phage integrase family, score 1.7e-10.
 
  
 0.519
nanE
Putative N-acetylmannosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
   
 0.492
SUB0236
Putative glucose-specific phosphotransferase system (PTS), IIABC component.
  
  
 0.472
SUB0830
Transcription antiterminator (pseudogene); HMMPfam hit to PF00874, PRD domain, score 2.1e-14.
  
  
 0.472
scrA
Putative sucrose-specific phosphotransferase system (PTS), IIABC component.
  
  
 0.472
SUB1763
Sugar phosphotransferase system (PTS), IIABC component.
  
  
 0.472
SUB0194
Transcriptional regulator (antiterminator).
     
 0.459
SUB0530
Transcriptional regulator (antiterminator).
     
 0.459
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.