Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB0170RpiR family regulatory protein. (265 aa)    
Predicted Functional Partners:
SUB0169
Putative membrane protein.
       0.574
SUB0172
Oxidoreductase family protein.
 
     0.570
SUB0806
Putative integrase (pseudogene); HMMPfam hit to PF00589, Phage integrase family, score 1.7e-10.
 
  
 0.527
nanE
Putative N-acetylmannosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
   
 0.498
SUB0167
Conserved hypothetical protein.
       0.434
SUB0236
Putative glucose-specific phosphotransferase system (PTS), IIABC component.
  
  
 0.415
SUB0830
Transcription antiterminator (pseudogene); HMMPfam hit to PF00874, PRD domain, score 2.1e-14.
  
  
 0.415
scrA
Putative sucrose-specific phosphotransferase system (PTS), IIABC component.
  
  
 0.415
SUB1763
Sugar phosphotransferase system (PTS), IIABC component.
  
  
 0.415
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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