STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0229Putative DNA-binding phage protein. (204 aa)    
Predicted Functional Partners:
SUB0230
Putative phage membrane protein.
       0.610
SUB0228
Putative DNA-binding phage protein.
  
  
 0.567
SUB0231
Putative phage integrase; Similar to SUB1840, 49.487% identity (50.923% ungapped) in 390 aa overlap (1-381:1-388); Belongs to the 'phage' integrase family.
  
  
 0.517
SUB0227
Hypothetical phage protein; Similar to SUB1836, 75.000% identity (75.000% ungapped) in 96 aa overlap (1-96:1-96).
       0.442
SUB0221
Hypothetical phage protein.
 
     0.413
SUB0974
ABC transporter permease protein.
 
  
 0.405
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.