Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SUB0232Conserved hypothetical protein. (156 aa)    
Predicted Functional Partners:
SUB0234
Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
     
 0.869
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
     
 0.865
SUB0019
Putative amidase.
  
     0.675
SUB0010
Putative septum formation initiator protein.
  
     0.653
SUB0237
Endonuclease/exonuclease/phosphatase family protein.
 
     0.638
SUB0235
LacI family regulatory protein.
       0.558
SUB0231
Putative phage integrase; Similar to SUB1840, 49.487% identity (50.923% ungapped) in 390 aa overlap (1-381:1-388); Belongs to the 'phage' integrase family.
       0.532
SUB0236
Putative glucose-specific phosphotransferase system (PTS), IIABC component.
 
     0.514
SUB0754
Conserved hypothetical protein.
  
     0.502
ftsX
Putative cell division protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
  
     0.492
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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