STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0237Endonuclease/exonuclease/phosphatase family protein. (273 aa)    
Predicted Functional Partners:
SUB0236
Putative glucose-specific phosphotransferase system (PTS), IIABC component.
 
 
 0.993
malM
Putative 4-alpha-glucanotransferase.
    
 0.926
SUB0537
Putative alpha-amylase; Similar to the C-terminal region of Bacillus licheniformis amys alpha-amylase precursor (ec 3.2.1.1) (1,4-alpha-d-glucan glucanohydrolase) UniProt:AMY_BACLI (EMBL:A17930) (512 aa) fasta scores: E()=1.2e-86, 42.562% id in 484 aa.
  
 
 0.911
csdB
Putative cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
   
   0.851
SUB0232
Conserved hypothetical protein.
 
     0.631
SUB0460
Putative membrane protein; Possible gene remnant. Weakly similar to Photorhabdus luminescens (subsp. laumondii) ribose transport system permease protein RbsC UniProt:Q7NA78_PHOLL (EMBL:BX571859) (323 aa) fasta scores: E()=3.8, 30.928% id in 97 aa.
  
  
 0.584
SUB1763
Sugar phosphotransferase system (PTS), IIABC component.
 
  
 0.580
scrA
Putative sucrose-specific phosphotransferase system (PTS), IIABC component.
 
  
 0.561
SUB0626
Putative esterase.
  
    0.491
SUB0830
Transcription antiterminator (pseudogene); HMMPfam hit to PF00874, PRD domain, score 2.1e-14.
  
  
 0.483
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.