Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SUB0279Type I restriction-modification system M protein. (516 aa)    
Predicted Functional Partners:
SUB0973
Conserved hypothetical protein.
  
 
 0.982
SUB0282
Type I restriction-modification system S protein (pseudogene); Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.972
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
    
 
 0.699
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
     
 0.649
rpmG
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
      
 0.525
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
     
 0.458
SUB0779
Conserved hypothetical protein.
  
    0.437
SUB1343
Conserved hypothetical protein.
 
   
 0.435
fbpS
Fibronectin/fibrinogen-binding protein.
  
    0.431
SUB0278
Conserved hypothetical protein.
       0.400
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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