Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SUB0306Extracellular solute-binding protein. (539 aa)    
Predicted Functional Partners:
SUB0305
Binding-protein-dependent transport system membrane protein; Possible alternative translational start site.
 
 
 0.971
SUB0304
Binding-protein-dependent transport system membrane protein.
 
  
 0.941
SUB0307
Beta-fructofuranosidase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
     0.891
msmK
Multiple sugar-binding transport ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.767
scrK2
Similar to SUB1542, 69.310% identity (69.310% ungapped) in 290 aa overlap (1-290:4-293).
  
  
 0.756
malC
Putative maltose/maltodextrin ABC transport system permease protein.
 
 
 0.710
SUB1656
Putative transport system permease.
  
 
 0.661
SUB0163
Binding-protein-dependent transport system membrane protein.
  
 
 0.638
SUB1657
Putative transport system permease.
  
 
 0.638
SUB1198
Glycosyl hydrolase family protein.
 
   
 0.457
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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