Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SUB0307Beta-fructofuranosidase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family. (457 aa)    
Predicted Functional Partners:
scrA
Putative sucrose-specific phosphotransferase system (PTS), IIABC component.
 
 
 0.989
scrK2
Similar to SUB1542, 69.310% identity (69.310% ungapped) in 290 aa overlap (1-290:4-293).
  
 
 0.981
scrK1
Similar to SUB0308, 69.310% identity (69.310% ungapped) in 290 aa overlap (4-293:1-290).
  
 
 0.931
scrB
Putative sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
  
  
 
0.927
SUB0306
Extracellular solute-binding protein.
 
     0.891
SUB1763
Sugar phosphotransferase system (PTS), IIABC component.
 
  
 0.885
SUB0830
Transcription antiterminator (pseudogene); HMMPfam hit to PF00874, PRD domain, score 2.1e-14.
 
  
 0.833
SUB0309
Similar to SUB0837, 51.943% identity (53.249% ungapped) in 489 aa overlap (3-484:4-487); and SUB0834, 45.090% identity (47.569% ungapped) in 499 aa overlap (4-485:6-495); and SUB0841, 48.041% identity (49.786% ungapped) in 485 aa overlap (4-485:6-476); and SUB0200, 47.689% identity (49.241% ungapped) in 476 aa overlap (4-477:7-469); and SUB1579, 46.856% identity (49.784% ungapped) in 493 aa overlap (4-484:9-484); and SUB0905, 45.155% identity (47.198% ungapped) in 485 aa overlap (7-485:11-480); Belongs to the glycosyl hydrolase 1 family.
  
 
 0.806
SUB0303
LacI family regulatory protein.
 
  
 0.776
SUB0305
Binding-protein-dependent transport system membrane protein; Possible alternative translational start site.
     
 0.757
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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