Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SUB0312ABC transporter ATP-binding protein. (567 aa)    
Predicted Functional Partners:
SUB0311
Putative transport protein.
 
 0.994
SUB0313
Putative membrane protein.
 
  
 0.983
SUB0314
Conserved hypothetical protein.
 
     0.937
ecfT
Putative cobalt transport protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 0.754
dppB
Di-tripeptide transport system permease protein.
  
 
 0.706
dppC
Di-tripeptide transporter permease protein.
  
 
 0.694
ecfA
ABC transporter ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
0.681
ecfA-2
ABC transporter ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
0.681
SUB0586
Putative extracellular oligopeptide-binding protein; Similar to SUB1625, 69.853% identity (69.982% ungapped) in 544 aa overlap (4-547:9-551).
  
 0.615
dppA
Putative peptide binding protein; Q93QH8_9LACT; Similar to SUB0586, 69.853% identity (69.982% ungapped) in 544 aa overlap (9-551:4-547).
  
 0.615
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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