Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SUB0320Conserved hypothetical protein; Belongs to the UPF0340 family. (188 aa)    
Predicted Functional Partners:
SUB0319
Putative membrane protein.
 
    0.934
lacB1
Galactose-6-phosphate isomerase LacB subunit 1; Similar to SUB0794, 77.778% identity (77.778% ungapped) in 171 aa overlap (1-171:1-171).
 
    0.831
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.807
thiD
Putative phosphomethylpyrimidine kinase.
       0.807
prmC
Putative methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
      0.729
SUB0316
Putative aspartokinase; Belongs to the aspartokinase family.
       0.592
lacA2
Galactose-6-phosphate isomerase LacA subunit 2; Similar to SUB1457, 74.286% identity (74.286% ungapped) in 140 aa overlap (1-140:1-140).
  
    0.507
lacB2
Galactose-6-phosphate isomerase LacB subunit 2; Similar to SUB1456, 77.778% identity (77.778% ungapped) in 171 aa overlap (1-171:1-171).
  
    0.507
lacA1
Galactose-6-phosphate isomerase LacA subunit 1; Similar to SUB0793, 74.286% identity (74.286% ungapped) in 140 aa overlap (1-140:1-140).
  
    0.507
tig
Trigger factor (prolyl isomerase); Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
       0.443
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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