Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB0333Conserved hypothetical protein; Possible alternative translational start site after codons 7 and 11. (555 aa)    
Predicted Functional Partners:
SUB1270
Conserved hypothetical protein; Possible alternative translational start site after codon 4.
 
 0.997
SUB0332
Conserved hypothetical protein.
 
  
 0.993
SUB0755
DegV family protein.
 
 0.988
SUB0275
DegV family protein.
 
 0.915
SUB1445
Conserved hypothetical protein.
 
 
 0.888
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.686
SUB0334
Putative membrane protein.
       0.674
fba
Fructose-bisphosphate aldolase.
 
   
 0.609
SUB1547
Conserved hypothetical protein.
 
  
 0.528
SUB1085
Putative membrane protein.
   
  
 0.510
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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