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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0333Conserved hypothetical protein; Possible alternative translational start site after codons 7 and 11. (555 aa)    
Predicted Functional Partners:
SUB1270
Conserved hypothetical protein; Possible alternative translational start site after codon 4.
 
 0.990
SUB0755
DegV family protein.
 
 0.982
SUB0332
Conserved hypothetical protein.
 
  
 0.976
SUB0275
DegV family protein.
 
 0.931
SUB1445
Conserved hypothetical protein.
 
 
 0.890
fba
Fructose-bisphosphate aldolase.
 
   
 0.655
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.555
SUB0334
Putative membrane protein.
       0.527
SUB1547
Conserved hypothetical protein.
 
  
 0.511
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
      
 0.448
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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