STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0396Conserved hypothetical protein. (166 aa)    
Predicted Functional Partners:
SUB0397
Putative membrane protein; Belongs to the BI1 family.
  
    0.822
SUB0395
SpoU rRNA Methylase family protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.774
SUB0398
Pyridoxal-dependent decarboxylase.
 
     0.737
yidC
Membrane protein OxaA 2 precursor; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily.
 
  
 0.700
SUB0394
Putative acylphosphatase.
     
 0.692
SUB0848
Conserved hypothetical protein.
  
     0.625
SUB0930
Conserved hypothetical protein.
 
 
   0.574
SUB1280
Conserved hypothetical protein.
  
     0.476
SUB1665
Putative ssDNA-binding protein.
  
     0.469
cinA
CinA-like protein; Belongs to the CinA family.
 
    0.447
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.