Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SUB0414Putative membrane protein. (260 aa)    
Predicted Functional Partners:
SUB0413
ABC transporter, ATP-binding protein.
 
 
 0.955
SUB0415
Putative rRNA methylase.
       0.790
SUB0412
Radical SAM superfamily protein.
 
     0.739
SUB0410
Putative membrane protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
 
     0.599
SUB1174
ABC transporter, ATP-binding protein.
 
 
 0.581
SUB0411
PAP2 superfamily protein.
       0.533
SUB0416
Putative transport protein.
       0.531
sagG
ABC transporter ATP-binding protein.
  
 
 0.478
SUB0296
ABC transporter, ATP-binding protein.
  
 
 0.456
SUB0501
Similar to Leuconostoc mesenteroides mesentericin y105 transport/processing ATP-binding protein MesdD UniProt:MESD_LEUME (EMBL:LMMESCDEY) (722 aa) fasta scores: E()=3.6e-125, 51.676% id in 716 aa.
  
 
 0.456
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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