Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SUB0431Conserved hypothetical protein. (85 aa)    
Predicted Functional Partners:
SUB0430
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
    0.868
SUB0432
Branched-chain amino acid ABC transporter, amino acid-binding protein.
       0.686
clpP
Putative ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.653
SUB0433
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.646
SUB0434
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.646
SUB0435
Branched-chain amino acid transport ATP-binding protein.
       0.646
SUB0436
Branched-chain amino acid transport ATP-binding protein.
       0.646
SUB0437
Conserved hypothetical protein.
       0.597
SUB1315
Putative methylase.
  
  
 0.537
SUB0441
Initiation-control protein YabA; Involved in initiation control of chromosome replication. Belongs to the YabA family.
 
     0.522
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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