Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SUB0437Conserved hypothetical protein. (220 aa)    
Predicted Functional Partners:
SUB0434
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.835
SUB0433
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.834
SUB0435
Branched-chain amino acid transport ATP-binding protein.
 
    0.830
SUB0436
Branched-chain amino acid transport ATP-binding protein.
 
    0.829
SUB0432
Branched-chain amino acid ABC transporter, amino acid-binding protein.
 
     0.813
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
  
  
 0.786
rsmI
Tetrapyrrole (corrin/porphyrin) methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
   
   0.725
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.721
holB
Putative DNA polymerase III, delta' subunit.
       0.706
SUB0440
Conserved hypothetical protein.
       0.706
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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