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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0440Conserved hypothetical protein. (266 aa)    
Predicted Functional Partners:
rny
Putative phosphohydrolase; Endoribonuclease that initiates mRNA decay.
 
  
 0.847
holB
Putative DNA polymerase III, delta' subunit.
  
  
 0.829
SUB0441
Initiation-control protein YabA; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
    0.821
rsmI
Tetrapyrrole (corrin/porphyrin) methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.820
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.777
SUB0430
Conserved hypothetical protein; Belongs to the UPF0342 family.
 
   
 0.632
SUB0437
Conserved hypothetical protein.
       0.579
SUB0443
Putative membrane protein.
       0.551
SUB0433
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.472
SUB0434
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.472
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.