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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0464Conserved hypothetical protein; Possible alternative upstream translational start site. (78 aa)    
Predicted Functional Partners:
SUB0465
Putative short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.942
SUB0657
Putative membrane protein.
 
     0.678
SUB0848
Conserved hypothetical protein.
  
     0.590
SUB0466
Conserved hypothetical protein.
       0.557
srtA
Sortase A.
  
     0.505
SUB0463
Putative exported protein.
       0.496
SUB0648
Putative haloacid dehalogenase-like hydrolase.
  
     0.457
SUB0899
Putative phage repressor-like protein.
  
     0.452
SUB0232
Conserved hypothetical protein.
  
     0.450
SUB1572
Putative membrane protein.
  
     0.434
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.