Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SUB0487Conserved hypothetical protein; Belongs to the UPF0346 family. (71 aa)    
Predicted Functional Partners:
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.835
SUB0485
Conserved hypothetical protein; Belongs to the CvfB family.
     
 0.730
SUB1269
GDSL-like lipase/acylhydrolase protein.
 
  
 0.674
SUB0488
PhoH-like protein.
       0.670
SUB1299
Conserved hypothetical protein.
  
   
 0.663
SUB1619
Conserved hypothetical protein; Belongs to the UPF0356 family.
  
   
 0.637
rrf
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
       0.626
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.601
SUB1114
Conserved hypothetical protein.
  
     0.600
SUB1268
Putative membrane protein.
 
   
 0.598
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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