Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SUB0515Putative membrane protein. (122 aa)    
Predicted Functional Partners:
SUB0514
Hypothetical protein; Similar to the N-terminal region of Clostridium perfringens hypothetical protein CPE0752 UniProt:Q8XMD7_CLOPE (EMBL:BA000016) (112 aa) fasta scores: E()=0.058, 33.803% id in 71 aa. Possible gene remnant.
       0.566
SUB0516
Putative bacteriocin immunity protein.
       0.501
SUB0513
Putative bacteriocin immunity protein.
       0.493
pedA
Putative membrane protein; Similar to Streptococcus mutans putative immunity protein, blpl-like. UniProt:Q8DS96_STRMU (EMBL:AE015016) (133 aa) fasta scores: E()=1.2e-06, 33.577% id in 137 aa. CDS contains a frameshift after codon 2.
       0.401
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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