Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB0530Transcriptional regulator (antiterminator). (655 aa)    
Predicted Functional Partners:
SUB0529
Sugar phosphotransferase system (PTS), lactose/cellobiose-specific family IIB component.
 
  
 0.936
SUB0533
Sugar phosphotransferase system (PTS), IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
  
 0.926
SUB0531
Sugar phosphotransferase system (PTS), lactose/cellobiose-specific family, IIB component.
 
  
 0.922
fruA-2
Putative fructose-specific phosphotransferase system (PTS), IIABC component.
  
  
 0.906
SUB0532
Putative membrane protein.
 
     0.851
SUB1763
Sugar phosphotransferase system (PTS), IIABC component.
 
 
 0.839
scrA
Putative sucrose-specific phosphotransferase system (PTS), IIABC component.
 
 
 0.825
SUB0236
Putative glucose-specific phosphotransferase system (PTS), IIABC component.
  
 
 0.798
SUB0830
Transcription antiterminator (pseudogene); HMMPfam hit to PF00874, PRD domain, score 2.1e-14.
  
 
 0.798
SUB1761
Putative PTS multi-domain regulator.
 
  
 0.726
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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