Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SUB0538Putative glycosyltransferase. (332 aa)    
Predicted Functional Partners:
SUB0539
Putative glycosyltransferase.
 
  
0.996
SUB0714
Putative sulfatase.
    
 0.925
SUB0537
Putative alpha-amylase; Similar to the C-terminal region of Bacillus licheniformis amys alpha-amylase precursor (ec 3.2.1.1) (1,4-alpha-d-glucan glucanohydrolase) UniProt:AMY_BACLI (EMBL:A17930) (512 aa) fasta scores: E()=1.2e-86, 42.562% id in 484 aa.
   
 
 0.747
SUB1006
Putative membrane protein.
 
  
 0.739
ccpA
Catabolite control protein A.
       0.680
SUB0739
Putative membrane protein.
 
  
 0.662
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).
     
 0.638
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.536
rmlA
Glucose-1-phosphate thymidyl transferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.456
SUB1038
Putative glycosyl-1-phosphate-transferase.
 
  
 0.426
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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