Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vicXMetallo-beta-lactamase superfamily protein. (269 aa)    
Predicted Functional Partners:
vicR
Response regulator protein; Similar to SUB0567, 50.847% identity (52.402% ungapped) in 236 aa overlap (1-233:1-232).
  
  
 0.941
vicK
Sensor histidine kinase.
  
  
 0.879
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
     
 0.699
smc
Putative chromosome partition protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
    0.689
glnQ4
Putative glutamine transporter, ATP-binding protein 4; Similar to SUB1278, 53.719% identity (54.167% ungapped) in 242 aa overlap (3-244:5-244); and SUB1153, 51.653% identity (52.083% ungapped) in 242 aa overlap (4-245:6-245).
  
    0.688
SUB0550
Putative glutamine-binding protein precursor.
       0.661
SUB0549
Putative amino acid ABC transporter, permease protein.
       0.654
SUB0548
Putative amino acid ABC transporter, permease protein.
       0.646
ftsY
Putative cell division protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
     
 0.567
SUB0557
Putative haloacid dehalogenase-like hydrolase.
       0.551
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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