STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0563Putative membrane protein. (271 aa)    
Predicted Functional Partners:
SUB0564
Putative permease.
 
  
 0.972
SUB0565
Conserved hypothetical protein.
       0.755
SUB0576
Putative membrane protein.
 
     0.634
SUB0575
SprT-like protein; Belongs to the SprT family.
 
     0.615
SUB1429
Putative DNA-binding protein.
  
     0.522
SUB0574
Putative transcription accessory protein.
       0.508
SUB0754
Conserved hypothetical protein.
  
     0.494
SUB0566
Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein.
       0.480
SUB1190
Cell envelope-related transcriptional attenuator domain protein.
  
     0.472
xerD
Tyrosine recombinase XerD; Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site. Belongs to the 'phage' integrase family. XerD-like subfamily.
  
     0.470
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.