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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0576Putative membrane protein. (91 aa)    
Predicted Functional Partners:
SUB0974
ABC transporter permease protein.
 
 
 0.939
SUB0150
Conserved hypothetical protein.
 
  
 0.802
SUB1635
Putative membrane anchored protein.
  
     0.725
SUB1737
Putative exported protein.
  
     0.690
SUB0144
Putative Mga-like regulatory protein.
  
     0.683
SUB0012
Putative exported protein.
  
     0.653
SUB0574
Putative transcription accessory protein.
       0.645
SUB0575
SprT-like protein; Belongs to the SprT family.
       0.645
SUB1429
Putative DNA-binding protein.
  
     0.639
SUB1212
Putative lipoprotein.
  
     0.636
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.