Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SUB0598Glycosyl hydrolases family protein. (280 aa)    
Predicted Functional Partners:
SUB0048
Putative amidase.
  
   
 0.760
SUB1851
Putative transglycosylase protein.
 
   
 0.731
SUB0382
Replication initiation and membrane attachment protein.
  
     0.713
SUB0700
Rhamnan synthesis protein F family protein.
  
     0.709
SUB0012
Putative exported protein.
  
     0.699
SUB0150
Conserved hypothetical protein.
  
     0.689
xerD
Tyrosine recombinase XerD; Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site. Belongs to the 'phage' integrase family. XerD-like subfamily.
  
    0.688
SUB0599
Putative membrane protein.
 
     0.676
SUB0600
Putative lipoprotein.
 
     0.672
SUB1737
Putative exported protein.
  
     0.656
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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