STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aspCAspartate aminotransferase. (401 aa)    
Predicted Functional Partners:
asnB
Putative L-asparaginase.
    
 0.909
asnA
Aspartate--ammonia ligase.
     
 0.902
asnS
asparaginyl-tRNA synthetase.
  
  
 0.824
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 
 0.736
dinG
Putative ATP-dependent DNA helicase; 3'-5' exonuclease.
  
    0.678
SUB0625
Metallo-beta-lactamase superfamily protein.
  
    0.557
SUB0630
P-loop ATPase protein family protein; Displays ATPase and GTPase activities.
       0.514
SUB0631
Conserved hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
       0.514
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
       0.514
SUB0258
MarR family regulatory protein.
       0.443
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.