STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0695Putative rhamnosyltransferase. (384 aa)    
Predicted Functional Partners:
SUB0696
Putative glycosyltransferase.
 
  
 0.890
SUB0700
Rhamnan synthesis protein F family protein.
 
  
 0.872
SUB0697
Putative polysaccharide export ABC transporter permease protein.
  
  
 0.849
SUB0698
Putative polysaccharide export system ATP-binding protein.
  
 
 0.849
SUB0701
Putative membrane protein.
 
  
 0.809
SUB0699
Putative glycosyl transferase.
       0.772
SUB0703
Glycosyl transferase; Similar to SUB0525, 66.450% identity (66.450% ungapped) in 307 aa overlap (2-308:1-307).
  
  
 0.770
SUB0702
Putative membrane protein.
       0.754
SUB0704
GtrA-like protein.
  
  
 0.742
rmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.732
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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