SUB0701 protein (Streptococcus uberis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SUB0701

Putative membrane protein. (825 aa)

Predicted Functional Partners:

SUB0700

0.858

SUB0695

0.845

SUB0697

0.840

SUB0699

0.838

SUB0696

0.828

SUB0698

0.824

SUB0702

0.824

SUB0703

0.792

SUB0704

0.766

rmlD

0.614

Your Current Organism:

Streptococcus uberis

NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SUB0695	SUB0696	SUB0695	SUB0696	Putative rhamnosyltransferase.	Putative glycosyltransferase.	0.965
SUB0695	SUB0697	SUB0695	SUB0697	Putative rhamnosyltransferase.	Putative polysaccharide export ABC transporter permease protein.	0.948
SUB0695	SUB0698	SUB0695	SUB0698	Putative rhamnosyltransferase.	Putative polysaccharide export system ATP-binding protein.	0.949
SUB0695	SUB0699	SUB0695	SUB0699	Putative rhamnosyltransferase.	Putative glycosyl transferase.	0.819
SUB0695	SUB0700	SUB0695	SUB0700	Putative rhamnosyltransferase.	Rhamnan synthesis protein F family protein.	0.960
SUB0695	SUB0701	SUB0695	SUB0701	Putative rhamnosyltransferase.	Putative membrane protein.	0.845
SUB0695	SUB0702	SUB0695	SUB0702	Putative rhamnosyltransferase.	Putative membrane protein.	0.800
SUB0695	SUB0703	SUB0695	SUB0703	Putative rhamnosyltransferase.	Glycosyl transferase; Similar to SUB0525, 66.450% identity (66.450% ungapped) in 307 aa overlap (2-308:1-307).	0.783
SUB0695	SUB0704	SUB0695	SUB0704	Putative rhamnosyltransferase.	GtrA-like protein.	0.730
SUB0695	rmlD	SUB0695	SUB0694	Putative rhamnosyltransferase.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	0.850
SUB0696	SUB0695	SUB0696	SUB0695	Putative glycosyltransferase.	Putative rhamnosyltransferase.	0.965
SUB0696	SUB0697	SUB0696	SUB0697	Putative glycosyltransferase.	Putative polysaccharide export ABC transporter permease protein.	0.967
SUB0696	SUB0698	SUB0696	SUB0698	Putative glycosyltransferase.	Putative polysaccharide export system ATP-binding protein.	0.966
SUB0696	SUB0699	SUB0696	SUB0699	Putative glycosyltransferase.	Putative glycosyl transferase.	0.850
SUB0696	SUB0700	SUB0696	SUB0700	Putative glycosyltransferase.	Rhamnan synthesis protein F family protein.	0.962
SUB0696	SUB0701	SUB0696	SUB0701	Putative glycosyltransferase.	Putative membrane protein.	0.828
SUB0696	SUB0702	SUB0696	SUB0702	Putative glycosyltransferase.	Putative membrane protein.	0.809
SUB0696	SUB0703	SUB0696	SUB0703	Putative glycosyltransferase.	Glycosyl transferase; Similar to SUB0525, 66.450% identity (66.450% ungapped) in 307 aa overlap (2-308:1-307).	0.783
SUB0696	SUB0704	SUB0696	SUB0704	Putative glycosyltransferase.	GtrA-like protein.	0.777
SUB0696	rmlD	SUB0696	SUB0694	Putative glycosyltransferase.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	0.868