STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lspALipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. (148 aa)    
Predicted Functional Partners:
SUB0730
Putative RNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
    0.875
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
 
   
 0.824
SUB0728
LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.
       0.800
eep
Putative pheromone-processing membrane metalloprotease.
  
  
 0.630
rpmA
50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
    0.579
htrA
Serine protease.
     
 0.566
fruA-2
Putative fructose-specific phosphotransferase system (PTS), IIABC component.
     
 0.552
mtuA
Previously sequenced as Streptococcus uberis extracellular manganese-binding protein MtuA UniProt:Q70UQ6 (EMBL:SUB539135) (310 aa) fasta scores: E()=1.1e-111, 100.000% id in 310 aa; Belongs to the bacterial solute-binding protein 9 family.
      
 0.547
SUB0726
Conserved hypothetical protein.
       0.518
dppA
Putative peptide binding protein; Q93QH8_9LACT; Similar to SUB0586, 69.853% identity (69.982% ungapped) in 544 aa overlap (9-551:4-547).
      
 0.517
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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