Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB0787Integrase; CDS is extended at the C-terminus in comparison to orthologues. Possible frameshift mutation in the C-terminus. Similar to SUB0805, 56.021% identity (56.021% ungapped) in 382 aa overlap (4-385:8-389); Belongs to the 'phage' integrase family. (410 aa)    
Predicted Functional Partners:
SUB0786
Conserved hypothetical protein.
     
 0.855
SUB0785
Putative plasmid replication protein; Similar to SUB1608, 72.043% identity (72.043% ungapped) in 186 aa overlap (1-186:1-186).
       0.680
SUB0789
Putative replication initiator protein.
 
   
 0.623
SUB0783
Putative FtsK/SpoIIIE family protein.
     
 0.466
xpt
Putative xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
  
    0.459
SUB0784
Putative membrane protein.
       0.444
SUB0782
Conserved hypothetical protein.
       0.443
SUB0788
Conserved hypothetical protein.
       0.412
comFC
Putative late competence protein.
   
    0.407
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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