Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB0788Conserved hypothetical protein. (57 aa)    
Predicted Functional Partners:
SUB0789
Putative replication initiator protein.
       0.835
SUB0408
Conserved hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
      
 0.441
SUB1598
Hypothetical protein.
      
 0.441
rpmC
50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
      
 0.425
rpmD
50S ribosomal protein L30.
      
 0.425
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
      
 0.425
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
      
 0.425
rpmH
50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
      
 0.425
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
      
 0.425
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
      
 0.419
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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