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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacX2Aldose 1-epimerase 2; Similar to SUB1453, 48.986% identity (49.828% ungapped) in 296 aa overlap (6-299:3-295). (300 aa)    
Predicted Functional Partners:
SUB0801
Conserved hypothetical protein.
       0.786
lacG2
6-phospho-beta-galactosidase 2; Similar to SUB1448, 76.559% identity (76.559% ungapped) in 465 aa overlap (3-467:2-466); Belongs to the glycosyl hydrolase 1 family.
  
  
 0.733
lacE2
Putative lactose-specific phosphotransferase system (PTS), IIBC component 2; Similar to SUB1450, 61.717% identity (62.050% ungapped) in 559 aa overlap (1-558:1-557).
  
  
 0.722
lacF2
Putative lactose-specific phosphotransferase system (PTS), IIA component 2; Similar to SUB1451, 60.396% identity (60.396% ungapped) in 101 aa overlap (1-101:1-101).
  
  
 0.546
SUB0803
Putative DNA_binding protein.
       0.453
lacT2
Transcription antiterminator LacT 2; Similar to SUB1452, 49.097% identity (49.097% ungapped) in 277 aa overlap (1-277:1-277).
       0.437
lacD2
Tagatose 1,6-diphosphate aldolase 2; Similar to SUB1454, 75.460% identity (75.692% ungapped) in 326 aa overlap (1-326:1-325); and SUB0040, 75.000% identity (75.232% ungapped) in 324 aa overlap (3-326:4-326); Belongs to the aldolase LacD family.
  
  
 0.420
SUB1117
Conserved hypothetical protein.
 
   
 0.415
SUB0236
Putative glucose-specific phosphotransferase system (PTS), IIABC component.
  
  
 0.404
SUB0830
Transcription antiterminator (pseudogene); HMMPfam hit to PF00874, PRD domain, score 2.1e-14.
  
  
 0.404
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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