Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SUB0842Putative membrane protein. (374 aa)    
Predicted Functional Partners:
radC
DNA repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.768
SUB0835
GDSL-like Lipase/acylhydrolase family protein.
       0.553
SUB0841
Similar to SUB0905, 59.158% identity (59.408% ungapped) in 475 aa overlap (4-476:6-480); and SUB0837, 57.290% identity (59.110% ungapped) in 487 aa overlap (3-475:2-487); and SUB0200, 50.535% identity (50.972% ungapped) in 467 aa overlap (6-470:7-471); and SUB0834, 49.800% identity (52.866% ungapped) in 500 aa overlap (1-476:1-495); and SUB0309, 47.835% identity (49.573% ungapped) in 485 aa overlap (6-476:4-485); and SUB1579, 53.347% identity (55.195% ungapped) in 478 aa overlap (6-472:9-481); Belongs to the glycosyl hydrolase 1 family.
       0.547
SUB0839
Phosphoglycerate mutase family protein; Belongs to the phosphoglycerate mutase family.
       0.541
SUB0840
Putative transporter protein.
       0.491
SUB0945
Putative membrane protein.
  
     0.434
SUB0838
Phosphoglycerate mutase family protein; Belongs to the phosphoglycerate mutase family.
       0.422
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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